Protein Info for Rv0304c in Mycobacterium tuberculosis H37Rv

Annotation: PPE family protein PPE5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2204 PF01469: Pentapeptide_2" amino acids 97 to 133 (37 residues), 27.3 bits, see alignment (E = 1.4e-10) amino acids 105 to 142 (38 residues), 33 bits, see alignment (E = 2.3e-12) amino acids 131 to 168 (38 residues), 31 bits, see alignment (E = 9.3e-12) amino acids 194 to 231 (38 residues), 35.9 bits, see alignment (E = 2.7e-13) amino acids 233 to 271 (39 residues), 39.8 bits, see alignment (E = 1.7e-14) amino acids 273 to 311 (39 residues), 34.2 bits, see alignment (E = 9.4e-13) amino acids 536 to 574 (39 residues), 36.4 bits, see alignment (E = 1.9e-13) amino acids 576 to 614 (39 residues), 35.8 bits, see alignment (E = 2.9e-13) amino acids 612 to 649 (38 residues), 31.4 bits, see alignment (E = 7e-12) amino acids 655 to 691 (37 residues), 37.5 bits, see alignment (E = 8.6e-14) amino acids 683 to 722 (40 residues), 37.7 bits, see alignment (E = 7.7e-14) amino acids 693 to 731 (39 residues), 42.9 bits, see alignment (E = 1.8e-15) amino acids 724 to 762 (39 residues), 40.6 bits, see alignment (E = 9.8e-15) amino acids 958 to 995 (38 residues), 29.7 bits, see alignment (E = 2.3e-11) amino acids 998 to 1035 (38 residues), 33.3 bits, see alignment (E = 1.8e-12) amino acids 1041 to 1077 (37 residues), 35.6 bits, see alignment (E = 3.5e-13) amino acids 1079 to 1118 (40 residues), 33 bits, see alignment (E = 2.2e-12) amino acids 1120 to 1158 (39 residues), 30.2 bits, see alignment (E = 1.7e-11) amino acids 1409 to 1447 (39 residues), 31.6 bits, see alignment (E = 6e-12) amino acids 1430 to 1466 (37 residues), 31.5 bits, see alignment (E = 6.8e-12) amino acids 1472 to 1508 (37 residues), 36.9 bits, see alignment (E = 1.4e-13) amino acids 1510 to 1549 (40 residues), 38.5 bits, see alignment (E = 4.2e-14) amino acids 1545 to 1583 (39 residues), 46.6 bits, see alignment (E = 1.3e-16) amino acids 1576 to 1614 (39 residues), 38.1 bits, see alignment (E = 5.7e-14) amino acids 1869 to 1906 (38 residues), 27.5 bits, see alignment (E = 1.2e-10) amino acids 1905 to 1942 (38 residues), 37.6 bits, see alignment (E = 8e-14) amino acids 1934 to 1972 (39 residues), 29.1 bits, see alignment (E = 3.7e-11) amino acids 1977 to 2013 (37 residues), 36.9 bits, see alignment (E = 1.4e-13) amino acids 2015 to 2054 (40 residues), 36.2 bits, see alignment (E = 2.3e-13) amino acids 2056 to 2094 (39 residues), 37.2 bits, see alignment (E = 1.1e-13)

Best Hits

Predicted SEED Role

"PPE family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2204 amino acids)

>Rv0304c PPE family protein PPE5 (Mycobacterium tuberculosis H37Rv)
MNLVSTTSGMSGFLNVGALGSGVANVGNTISGIYNVGTSDLSTPAVNSGLANIGTNIAGL
LRDGAGTAAINLGLANHGNLNVGFASLGGFNFGGATIGHNNVGIGNTGIFDVGLANLGSY
NIGFGNLGDDNLGFGNFGSYNIGFGNVGNDNLGFANAGGGNIGFANTGSNNVGFGNTGSN
NVGIGLTGNGQIGFGSFNSGSGNIGLFNSGSNNIGFFNSGSGNFGIANSGSFNTGIGNTG
NTNTGLFNSGDVNTGAFNPGSFNTGSFNTGSFNTGGFNPGNTNTGYLNIGNYNTGIANTG
DVDTGAFITGNYSNGLFLSGDYQGLVGLNLVIDMPLPISLGVNIPIDIPITASAGNITLM
GVTIPPTGDIVLSSIAGQRAHFGPITIPNITVVGPTTTVAIGGPNTAITITGGGAIRIPL
ISIPAAPGFGNSTTNPSSGFFNTGAGGASGFGNFGGANSGFWNLASATSGASGLLNVGAL
GSGLANVGTTVSGFYNTSTSDLATPAFNSGLANISTSIAGLLRDSTGTMVLNLGLANHGT
LNVGIANLGDYNIGFANLGSANFGSANIGGNNIGGANTGIFDIGLANLGSYNIGFGNFGD
DNLGFGNLGSYNVGFGNLGNDNLGFANTGSNNIGFANTGSNNIGIGLTGDGQIGFGSLNS
GSGNIGLFNSGSGNIGFFNSGNGNVGIGNTGTANFGLGNTGSTNTGFFNSGDVNTGIGNT
GSFNTGSFNPGDSNTGDFNPGSYNTGLGNTGDVDTGAFISGSYSNGFLWSGNYQGLIGLH
AALAIPEIALTFGVDIPIHIPINIDAGVVTLQGFSIVAAENNIDFTPIIIPTINITLPTA
AITVGGPTTSIGITASAGIGSITIPIIDIPATSGFGNSTTSPSSGFFNSGAGSASGFLNV
VAGASGISGYLNVGALGSGVTNVGHTVSGFYNASALDLVTPAFASGLMRDGMGTMTLNLG
LANLGSNNAGFGNTGIFDVGVANLGNYNIGFGNFGDDNLGFANLGSYNIGVANTGSNNIG
FANTGSNNIGIGLTGTGQIGIGALNSGSGNIGLFNSGDGNIGFFNSGTGNFGIGNTGTGN
FGIGNSGSTSTGLFNSGDGNTGGFNPGNFNTGNFNTGSFNTGGFNAGNTNTGHFNTGNYN
TGIANTGDVSTGAFISGNYSNGILWRGDYQGLIGYSYALTIPEIPAHLDVNIPIDIPITG
SFTDLVVDNFTIPIIGFESFAFSFHIHTEPDIGPIIVPSFVLSVPTFAIAVGGPTTAINI
SATAGLGPITIPIIDIPAAPGIGNSTTSPSSGFFNTGAGTASGFGNVGGNTSGLWNLASA
ASGVSGLLNVGALGSGVANVGNTISGIYNTSPLDLGTPAFGSGLANIAGLLQGGAGTTIL
DLAGLGNLNVGLANLGGSNFGIGNTGIFNVGFANVGNHNIGLANLGNYSVGFANSGNYHI
GIANTGSANIGFANTGSGNIGIGLTGTGQIGFGSFNSGSHNIGLFNSGDGNVGFFNSGTG
NVGIGNTGTANFGIANSGSFNTGLGNTGSTNTGLFNPGNVNTGVGNTGSINTGSINTGSF
NTGSTNTGSFNLGDHNTGSFNSGDYNTGYFNAGDYNTGVANTGNVNTGAFISGNYSNGFF
WRGDYQGLIGLSTTITIPEIPYRYDLSVPIDIPITGTVVATTPNSFTIPGFQIRVLLGPA
AVLVNEMIGPITIDVNQVIAIDSPIQQTISMVGTGGFGPIPIGISIGGTPGFGNSTTGPS
SGFFHTGAGHVSGFGNFGAGNMSGSGNFGAGNSGFFNAGGLGNSGLLNFGALQSGLANLG
NTISGVYNTSTLDLATPAFGSGIANIGANLAGLFLDNTGNLTLNFGVANQGGLNAGIGNL
GSVNIGFVNTGDSNLGIGNLGDLNFGGVNIGGNNIGIANTGIFDIGLANLGSYNIGLANL
GDDNLGFGNAGSYNIGFANFGSDNLGFANTGSYNIGFANTGNNNIGVGLTGNGQIGIGSL
NSGSNNIGLFNSGSGNIGFFNSGTGNVGIFNTGTGNFGLANSGGFNTGIGNAGSTNTGVF
NPGDLNTGSFNPGSFNTGGFNPGSGNTGYLNTGDYNTGVANTGDVDTGAFITGSYSNGFL
VSGDYQGLIGLPLLGIPVTPGYFNLTGGPSSGFFNSGAGSVSGFVNSGAGLSGYLNTGAL
GSGVANVGNTISGWLNASALDLATPGFLSGIGNFGTNLAGFFRG