Protein Info for RS_RS22645 in Ralstonia solanacearum GMI1000

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 PF00005: ABC_tran" amino acids 28 to 169 (142 residues), 104.7 bits, see alignment E=6.4e-34

Best Hits

KEGG orthology group: K02017, molybdate transport system ATP-binding protein [EC: 3.6.3.29] (inferred from 100% identity to rso:RS05462)

Predicted SEED Role

"Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)" in subsystem Molybdenum cofactor biosynthesis or Transport of Molybdenum (TC 3.A.1.8.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.3.29

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XQS4 at UniProt or InterPro

Protein Sequence (245 amino acids)

>RS_RS22645 ABC transporter ATP-binding protein (Ralstonia solanacearum GMI1000)
MSLDVTLQKTLASAARVFSLDIVLRSDSRRVVLYGPSGAGKSLTLRAIAGLLTPERGRIV
LNGRTLFDHAERIDLATQARRVGYLFQDYALFDHLTVAQNIAFGLRRGWLNPPRKPRDPR
VQHWIDTFELGPVAANYPAQISGGQRQRTALARALIAEPAMLLLDEPFAALDPALRTRMR
AELLALQQRLDVPTLMITHDPADVEIFGDHVFELRDGRVVADAVRAPGAATVVPYPHLTV
VANQG