Protein Info for RS_RS19390 in Ralstonia solanacearum GMI1000

Annotation: IS4 family transposase ISRso13

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 444 transmembrane" amino acids 31 to 50 (20 residues), see Phobius details amino acids 318 to 337 (20 residues), see Phobius details PF01609: DDE_Tnp_1" amino acids 110 to 331 (222 residues), 60.6 bits, see alignment E=8.9e-21

Best Hits

KEGG orthology group: K07495, putative transposase (inferred from 100% identity to rso:RSc1864)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (444 amino acids)

>RS_RS19390 IS4 family transposase ISRso13 (Ralstonia solanacearum GMI1000)
MARLALERALPATWVDEVFEVHRNRQYPRELMFSTIVELMTLVTLGLRPSLHAAARKMGN
LPVSMAALYDKLNRTEPAILRGLVRGSAQRLAQVAVHLDERTSLPGWQLRIVDGNHLPAS
EKRLGPLRGYRGAALPGHSLVVYDPDLGLVCDVVACEDAYESERAGMQPLLDSAQAGQLW
IADRHFCTHTIMQGWSRAGAEFIVREHARHPRLSRHGCWSGYKRIDTGRVREQAIEVRVV
HDDECQARPPSWRRIEIELDTPTEAGETVIGLWSNLPAQVDAATIAALYRKRWRIESMFQ
RLESVLHSEIKSLGHPRAALLGFTVAVLAYNVVSLLQRAVEQAHHESAPQLEVSSYHLAE
HIKSGYEGMLIALPAEHWPSAAEASAQSLAQRLLHLARRISPTQVATSKRGPKIDKPTGY
VDGSIARAHVCTARVLKKARAERP