Protein Info for RS_RS16360 in Ralstonia solanacearum GMI1000

Annotation: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase" amino acids 20 to 293 (274 residues), 220.6 bits, see alignment E=1.4e-69 PF00590: TP_methylase" amino acids 20 to 222 (203 residues), 107 bits, see alignment E=1.4e-34 PF23016: RsmI_C" amino acids 252 to 295 (44 residues), 44.8 bits, see alignment 8.9e-16

Best Hits

KEGG orthology group: K07056, (no description) (inferred from 100% identity to rso:RSc3266)

Predicted SEED Role

"rRNA small subunit methyltransferase I" in subsystem Heat shock dnaK gene cluster extended

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XUC5 at UniProt or InterPro

Protein Sequence (300 amino acids)

>RS_RS16360 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (Ralstonia solanacearum GMI1000)
MSDPDWTLLAHDQHYPAGALYVVATPIGNAADVSLRARHVLGLADAVACEDTRNTGQLLH
RLGLSRPLLAAHEHNEREAAARIVERLARGERIAYVSDAGTPGVSDPGARIVEAVRAAGQ
RVIPLPGASAVVTALSAAGALLETSAGQFTFVGFLPPKAGQRDTAIRQWAAHGPAWVLYE
APHRIDATLAALAAHLPARRLLIGRELTKLFEQIVVLPAAEAPAWLAADASHGKGEFVLV
VEGAGAQEAAPTALAADQVLRLLLAELPAKRAAKLAGAITGAPVDALYQSALALKNDGRD