Protein Info for RS_RS11495 in Ralstonia solanacearum GMI1000

Annotation: lytic transglycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF01464: SLT" amino acids 85 to 182 (98 residues), 108.4 bits, see alignment E=8e-36

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc2291)

Predicted SEED Role

"Membrane-bound lytic murein transglycosylase E (EC 3.2.1.-)" (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XX27 at UniProt or InterPro

Protein Sequence (210 amino acids)

>RS_RS11495 lytic transglycosylase (Ralstonia solanacearum GMI1000)
MQASLPGSGFAAVLIAGMAGAPSVSAQIFGAVQSDGTVVLTNLQSGPHSPTFRVIVAARR
GPAQPLAENARAAVVAVDTTRFSDIIAEAGRKWNVEPELLRAIIAVESKFNPRAVSKRGA
RGLMQLMPGTARRFTAGDLFDPRANVLAGAQYLRFLLDLFGNDVELAVAAYNAGENAVIR
AGYRIPALAETRSYVPAVMARYRRLSASTL