Protein Info for RS_RS00830 in Ralstonia solanacearum GMI1000

Annotation: FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 PF13450: NAD_binding_8" amino acids 8 to 72 (65 residues), 37.4 bits, see alignment E=3.9e-13 PF01593: Amino_oxidase" amino acids 15 to 402 (388 residues), 105.9 bits, see alignment E=4.9e-34

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc0168)

Predicted SEED Role

"Phytoene dehydrogenase and related proteins" in subsystem Carotenoids

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y313 at UniProt or InterPro

Protein Sequence (427 amino acids)

>RS_RS00830 FAD-dependent oxidoreductase (Ralstonia solanacearum GMI1000)
MSTERIAVLGAGPMGLGAAYQLVKDGRKPVIFEADDRVGGMAACFDFGGLSIERYYHFHA
ISDHAFLEVLRELGIEDKMQWRETKMGYFYQGRVQPWGNPIALLKFKGLSLSAKIRYGLH
AFLSTKRNNWKPLDRIEASGWIRRWIGEEAWEVLWRRLFDYKFYDHAYNLSAAWIWSRIR
RIGRSRYDLFREKLGYLEGGSDTLLEGMRRYIEANGGEFRLGTPVQKVVIEGGAVKGIET
QGGFEPFDKVISTIPLPYVPRVMPDLPTDILDAFGRVKNIAVVCVIAKLKKRVTENFWLN
TNDPDMDIPGIVEYTNLRPLDQHIVYVPFYMPGEHPKYQEADAVFIDKVKHYLMKVNPDL
TADDFIDVRASRYRFAQPICEPGYLDRLPPIQLPIKGLLVADTSYYYPEDRGISESIGLS
RKMARML