Protein Info for RS_RS00250 in Ralstonia solanacearum GMI1000

Annotation: FAD-binding oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 508 PF01565: FAD_binding_4" amino acids 34 to 160 (127 residues), 53.3 bits, see alignment E=2.5e-18 PF08031: BBE" amino acids 458 to 507 (50 residues), 41.6 bits, see alignment 9.7e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc0050)

Predicted SEED Role

"FIG00553873: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y3D0 at UniProt or InterPro

Protein Sequence (508 amino acids)

>RS_RS00250 FAD-binding oxidoreductase (Ralstonia solanacearum GMI1000)
MTLDVTRQDPRYDTLRHGFNLRWPSSDAQAAGRIALCEKTDEVAPALQRIIDTGMRPTVR
SGGHCYEDFVSNNPGGVIVDLSLLNAPEVRADGAVRVPAGMQNWNGALELYKRHGVTLPG
GSCYSVGAGGHISGGGYGLLSRLQGLTVDWLSAVDIVTVDKQGRAAPRTVDAARDPDLFR
ACRGAGGGNFGIITSYTFARLPEAPREVALATVAFDWAAMTPERFAELLRLYGDYWATRG
KDPDTWGLFSLLKLTHKSAGQIVMLTQFCNPDGTCRDLSVLNDFLARFQVCAPVPARARP
PGYGPAHRQGVGQLLCSKPHTVVQYDWLTATQSLNGSGPNQRGKYKSAYMKRGFTAREAQ
RIYTHLTRTVQGIDLSQSLLQVDSYGGAVNKAERIADTAVPQRASVMKLQYQTYWTSAAD
DAGHLRWIGDFYRDVYGTPDVSAPHAGTPYPGDRYEGCYINYPDVDMLAYPFWPQLYYGD
GDLYAFLQRVKRRYDPNNIFHHAMSVRP