Protein Info for RR42_RS36980 in Cupriavidus basilensis FW507-4G11

Annotation: amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 224 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 48 to 71 (24 residues), see Phobius details amino acids 83 to 106 (24 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details amino acids 161 to 173 (13 residues), see Phobius details amino acids 189 to 213 (25 residues), see Phobius details PF00528: BPD_transp_1" amino acids 30 to 205 (176 residues), 35.8 bits, see alignment E=3.5e-13

Best Hits

KEGG orthology group: None (inferred from 76% identity to reh:H16_B2489)

Predicted SEED Role

"Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YGI5 at UniProt or InterPro

Protein Sequence (224 amino acids)

>RR42_RS36980 amino acid ABC transporter permease (Cupriavidus basilensis FW507-4G11)
MTVALSVAVFVLGCAIAAGWLVLARSPIMPLRLTARGAVGLLRRTPLLVQLFFWYFGAAQ
LLGEGAIGALYDWQGWRIGGWHVPAPSLEALASLAGIGLYASAFYARELEAGLANVPRGQ
GAAALALGFTPAAAFWRVVLPQALRIAARPMVGQFCQTIKNTSLAMAIGFAEMSYTARQV
ETDSLMTFQAFGLATLLYVALILLLQAAAPVLLRCLGWTEAARA