Protein Info for RR42_RS36010 in Cupriavidus basilensis FW507-4G11

Annotation: peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 167 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 49 to 69 (21 residues), see Phobius details amino acids 78 to 108 (31 residues), see Phobius details amino acids 148 to 166 (19 residues), see Phobius details PF01478: Peptidase_A24" amino acids 2 to 106 (105 residues), 52 bits, see alignment E=4.2e-18

Best Hits

Predicted SEED Role

"FIG00974423: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YS58 at UniProt or InterPro

Protein Sequence (167 amino acids)

>RR42_RS36010 peptidase (Cupriavidus basilensis FW507-4G11)
MIAALFCAAIIWTDFAYRKVPNAVLAATIVAIGLALAFGPASEPVPGLGSRLLGFLVGLL
VMLPVYALGRMGAGDIKFFAVTGLFTGPMGLVTVWVVGSLLALAHALLVRMQAGAVWAAW
RDHFASLQRRAGGISVPGAAPHTAERRGIPYAAYLAIGLLVWMILGR