Protein Info for RR42_RS35930 in Cupriavidus basilensis FW507-4G11

Annotation: DNA repair exonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1025 transmembrane" amino acids 870 to 883 (14 residues), see Phobius details PF13476: AAA_23" amino acids 5 to 210 (206 residues), 88.9 bits, see alignment E=1.1e-28 PF13558: SbcC_Walker_B" amino acids 905 to 982 (78 residues), 35.4 bits, see alignment 1.5e-12

Best Hits

KEGG orthology group: K03546, exonuclease SbcC (inferred from 57% identity to reu:Reut_B5583)

Predicted SEED Role

"Exonuclease SbcC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YFZ7 at UniProt or InterPro

Protein Sequence (1025 amino acids)

>RR42_RS35930 DNA repair exonuclease (Cupriavidus basilensis FW507-4G11)
MRPLRLKLQAFGPFAASEEIDFTRLGERAFFLIHGPTGAGKTTLLDAICFALYGDTSGGE
RSAQDMRSANADPALRTEVTFEFSLGGQRYLATRSPAQERPKLRGEGTVKETPKAQLDVM
GDAGWTSKASQPNKVDDFVRNLLGFDSSQFRQVIVLPQGRFRELLTADSKSRQAILERLF
HTELYRRVEELLKGQAAGIRQEAERLRIEQTALLQQYQLASVDALREQAAGLQAQLAELR
QRDVAARTALEVATLATRQGEQTDARLREQRDTETAHAALMAQRPEMEAQRQRLQAARRA
MQVQPFEQHLGQAVQEHQQAQQALAAASARSAACAALSATAAAGLEAEAARAGERQAAQK
QVTELEAMLPQAQRLGVLQQELAAAARQQAQAGAAHAGALQAQQQVTATLRQAEAGLAQA
QEGARGLETIQLKLAGLAQQATTLDKYAATLAQCEQAGRQADVDQRAARQAATQQAASLA
RLRETEQAWRAGQAARLAAGLQDGQACAVCGSTAHPRLAQHVDALVSDEALDLAREAARL
ADQAAQGAASRAQGALLAATHRQEQLDELREAAGAVGMPEGAAQDPAAARQQLAGAIQAL
RQQQQAAQAAAGRCQLLATEVERQQAALTAAEAAIRAADAAAQDAGQRHAKLQGEWQAAS
AQVPPDRREPERLTAALAQARRDLAAREAALAAAQAADKQAGVGLAAALAAQAAAQASLA
THATRQTQADTAFASALEQAGFVSREAYAEARMPGAQMEQAEAQVNRFDLDLAAAGDRRE
RAAIAARDLAPPDLAALRQAQADAAGALEALVRQQADLHRSRENLLQCQQRLDALASKGA
DIERSYAVLGRLAEVANGNNPRRMTFQRFVLATLLDEVLEAASLRLMRMSRNRYELQRVR
QQGDQRTAGGLDLEVFDHDTGMARPANTLSGGEGFLASLSLALGLADVVQSRAGGIQLDT
LFVDEGFGTLDPESLDFAIRTLIDLQHAGRLVGIISHVAELRERIDVRLEIRAGAGGSRA
ELQLP