Protein Info for RR42_RS35760 in Cupriavidus basilensis FW507-4G11

Annotation: flagellar biosynthesis regulator FlhF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 772 TIGR03499: flagellar biosynthesis protein FlhF" amino acids 1 to 253 (253 residues), 243.6 bits, see alignment E=2.1e-76 PF00448: SRP54" amino acids 167 to 361 (195 residues), 125.3 bits, see alignment E=1.3e-40

Best Hits

KEGG orthology group: K02404, flagellar biosynthesis protein FlhF (inferred from 68% identity to reh:H16_B0254)

Predicted SEED Role

"Flagellar biosynthesis protein FlhF" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YFX3 at UniProt or InterPro

Protein Sequence (772 amino acids)

>RR42_RS35760 flagellar biosynthesis regulator FlhF (Cupriavidus basilensis FW507-4G11)
MSVAKFVAANGREALRQVREAMGPDAVVLSNRTVEGGVEIVAMRDTDLGAISSNAPVFTP
PPAAAVAVDGALGDLRGELQTMRAMMERQFSGVGTHSLPSIGADPLRDSLFTWLVTAGFS
GQLARSLLGHLPLGHDRPAAMAWIRQELARKVPVLNDEDALFAQGGVLALVGPTGVGKTT
TTAKLAARFVLKHGPERLALLTTDTFRIGAHEQLRIYGDILGVPVHAVKDAADLRFALAA
LTEKHLVIIDTVGMSQRDRNLSEQIAMLAGVQAPVQRILLLNGASHGDTLNEVVHAYRHD
ATPDGGIDGCIVSKLDEATHLGSVLDVVIRHRLPVYYASTGQRVPEHLELANGAALVERA
FQTPRRGSVFADAEAARRAMPAQDDSEATRAASPGGADGMLRSLTDSANAVGDCVEQLSA
GSYGFELVRSLWQQRNESAPSPRLMAQQVREAACRDLTRHCDRFVLSLSATVATPVAGRR
APRPWQHTLFLADRDGLPLAAAAAPAGRTGPALQGGQGGWEADAATLCAAIAAARTVVNV
LDAMPAAPVLARWQQTGERWLATARKTTRVASGGAALKLDALAETLTFHAVQDMDYRGRD
AVQWIAQSPVRVLEGQARGTRSIAEGGTEAGLLVSRVVDRENGQTLAVHYLLCDPALSAE
GAQLARWARWAEAGEAQLRTLRHALDHLGQGDGGNEPAQAEAQACARLLALQMGVAALRL
EQACDDSVGAFLARLTGRAPTRQPCGGAVLVEGIGRLLALLDVLENYPARGA