Protein Info for RR42_RS34065 in Cupriavidus basilensis FW507-4G11

Annotation: quinone oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 PF08240: ADH_N" amino acids 28 to 90 (63 residues), 45.6 bits, see alignment E=8.6e-16 PF00107: ADH_zinc_N" amino acids 152 to 278 (127 residues), 104.2 bits, see alignment E=7.6e-34 PF13602: ADH_zinc_N_2" amino acids 185 to 323 (139 residues), 92.1 bits, see alignment E=9.1e-30

Best Hits

KEGG orthology group: K00344, NADPH2:quinone reductase [EC: 1.6.5.5] (inferred from 47% identity to bmq:BMQ_2365)

Predicted SEED Role

"Quinone oxidoreductase (EC 1.6.5.5)" in subsystem ZZ gjo need homes (EC 1.6.5.5)

Isozymes

Compare fitness of predicted isozymes for: 1.6.5.5

Use Curated BLAST to search for 1.6.5.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YPF1 at UniProt or InterPro

Protein Sequence (327 amino acids)

>RR42_RS34065 quinone oxidoreductase (Cupriavidus basilensis FW507-4G11)
MKAVRFHKTGGPEMLVYEEVLDPKIADDEVLIRVEAAGVNFADVMRRRGDDYPEPSPTPF
TLGAEVAGTVVAVGKAVTSLPVGTPVLAAPGAGGYAQYVRVPAAIVMPLPPGLDSVRASA
LVAHGLTAALVLRKAARLAPGETVLVEAAAGGVGSFAVQLARLYGAGKVIAAASSPAKRA
LAERLGADSSVDYTAPDWAEQVRALTDGKGVDVILETAGGDNLAEAFKALAPFGRLIFIG
QSSGKSSLIDPWKLTVPNHTVTSFYVGAYLAFPDLIQATLTELIGLVLSGKVTLQTETVL
PLSQAAEAHRLLEGRSTTGKVVLQPWA