Protein Info for RR42_RS33995 in Cupriavidus basilensis FW507-4G11

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 transmembrane" amino acids 12 to 40 (29 residues), see Phobius details amino acids 81 to 100 (20 residues), see Phobius details amino acids 106 to 124 (19 residues), see Phobius details amino acids 132 to 152 (21 residues), see Phobius details amino acids 158 to 175 (18 residues), see Phobius details amino acids 187 to 205 (19 residues), see Phobius details amino acids 211 to 234 (24 residues), see Phobius details amino acids 245 to 265 (21 residues), see Phobius details amino acids 271 to 292 (22 residues), see Phobius details PF00892: EamA" amino acids 158 to 287 (130 residues), 53.9 bits, see alignment E=1.1e-18

Best Hits

KEGG orthology group: None (inferred from 92% identity to rme:Rmet_1891)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YF09 at UniProt or InterPro

Protein Sequence (300 amino acids)

>RR42_RS33995 membrane protein (Cupriavidus basilensis FW507-4G11)
MNAYPAPADASAITPTCALQGAIAIAAFASNALLCRVALFNYCIDAATFSDIRLLAGGAT
LLVVTKLRPEYAPQPSPDPDWISATALGIFVILFSLSYLSLGVSSGALVLFGTVQLTIFV
ACLLKGERFHRVALIGYLLAIAGLLCLTTPGVGVPRVSGLLMMVGAGVAWGIYTLRGRRS
ASPLSATAGNFLRATPICIVLGWMLNGDAHASVAGVALAVASGAVTSAIGFVVWGSVIRK
LPAMSAAAIQLLVPPVAALGGVLFLQEPVSTRLVVSFVAVLLGIWLAASVGARHRVKARC