Protein Info for RR42_RS33215 in Cupriavidus basilensis FW507-4G11

Annotation: transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 PF13439: Glyco_transf_4" amino acids 21 to 204 (184 residues), 42.5 bits, see alignment E=1.8e-14 PF13579: Glyco_trans_4_4" amino acids 27 to 201 (175 residues), 38.1 bits, see alignment E=5.2e-13 PF13692: Glyco_trans_1_4" amino acids 216 to 346 (131 residues), 89.4 bits, see alignment E=6.8e-29 PF00534: Glycos_transf_1" amino acids 217 to 359 (143 residues), 103.8 bits, see alignment E=2e-33 PF13524: Glyco_trans_1_2" amino acids 294 to 374 (81 residues), 43.9 bits, see alignment E=5.5e-15

Best Hits

KEGG orthology group: None (inferred from 57% identity to mpt:Mpe_A1051)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YUC2 at UniProt or InterPro

Protein Sequence (388 amino acids)

>RR42_RS33215 transferase (Cupriavidus basilensis FW507-4G11)
MKNFRVLIVHNAYRQWGGEDSVVDAEIALLRSRGHAVATYFRHNDEIAGSSKVVGAVNTL
WSNRTRRDMAALIEEFRPTVIHVHNTFPLVSPAVYWAASKAHVPVVQTLHNFRLMCLNAF
YLHDGQVCEECTGHLPWRGVVRKCYRGSTAASIALASTLVLHRGLGTYRMKVARYIALNE
FCRTKFIEGGLPASRIAVKPNFVDFHAPVELGPREGLLFVGRLSAEKGVKVLAEAAEAVP
HVRVRVVGDGPDLAVFNGIENLDLQGILPGSAVREEMCAAIALVVPSIWYENFPRTIVEA
FACGLPVIASRIGALADLVCDGRTGLLFEAGNSDDLAKKMEWALTNRERMAEMGRAARAQ
YEREFSSDVNYDKLINIYEEVTGELCKN