Protein Info for RR42_RS32905 in Cupriavidus basilensis FW507-4G11

Annotation: cytosine deaminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 PF01979: Amidohydro_1" amino acids 51 to 411 (361 residues), 81.9 bits, see alignment E=5.6e-27 PF07969: Amidohydro_3" amino acids 205 to 387 (183 residues), 45 bits, see alignment E=1.2e-15

Best Hits

KEGG orthology group: None (inferred from 82% identity to reu:Reut_B4132)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YEG2 at UniProt or InterPro

Protein Sequence (441 amino acids)

>RR42_RS32905 cytosine deaminase (Cupriavidus basilensis FW507-4G11)
MILVRGATLVTMEPALGEFTGDLLIDGERIAAIAPHLDADGAELIDARGFIVAPGFVNAH
MHTWQTALRGVASGWTLTEYFRQMHAGLATRFTPDDIGIATLVGAWNQLDCGTTTLVDWC
HNNPTPAHSDAALDALDHAGIRAAFLHGSPKPDPKPGALPFWEMPHPRSEVERLSRRLQG
SSLLSLGLAILGPHYSTLEVALHDFALAREFGLLASMHQGGGSARTPQGWERLEQAGLLG
PHINIVHGNNLTDTQLARFVGLGMSFSVTPENELTQGHGFPITGRLTRLGAAPSLGVDLE
SGLSGEMFIAARMALGIQRALDHAEYRQQHGEIAPAHAVSCRDALDWITLAGARMLGMQD
RIGSLAVGKQADLVMIDARKPNMMPLHDPVSAIVMQASLANIDSVFVAGKARKRHGRLLV
DGLPRKLEALRASGERLAAGR