Protein Info for RR42_RS32540 in Cupriavidus basilensis FW507-4G11

Annotation: taurine ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 273 transmembrane" amino acids 25 to 45 (21 residues), see Phobius details amino acids 83 to 104 (22 residues), see Phobius details amino acids 116 to 134 (19 residues), see Phobius details amino acids 140 to 159 (20 residues), see Phobius details amino acids 180 to 206 (27 residues), see Phobius details amino acids 233 to 255 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 92 to 262 (171 residues), 79.7 bits, see alignment E=1.2e-26

Best Hits

KEGG orthology group: None (inferred from 85% identity to cti:RALTA_B1998)

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YPT1 at UniProt or InterPro

Protein Sequence (273 amino acids)

>RR42_RS32540 taurine ABC transporter permease (Cupriavidus basilensis FW507-4G11)
MADAYATPVTKSGNPRSLRLPRALRGWVLPVGLVILWWAAVRFGWSTSPLLVPVSKVWAT
AVEQVRSGALFAALSASLWRDVAGFALGASVGLLFGTALGLSRLFEQLVGPTFHTIKQIS
LFAWIPLISVWFGLGDTAKVVFLSLAAFFPVVLNTFEGIRAVPADLLEVANVLKYSRRQV
LLRVVLPSASPSIFAGIHLALIYAWLATLGAEYMLVSGKGIGNTLTDGRENFWMDLVIFG
VIVVGLVGFTLNWIASRIETRLLAWRGRSVAAF