Protein Info for RR42_RS30920 in Cupriavidus basilensis FW507-4G11

Annotation: UDP-4-amino-4-deoxy-L-arabinose formyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 324 PF01370: Epimerase" amino acids 3 to 251 (249 residues), 166.4 bits, see alignment E=1.5e-52 PF01073: 3Beta_HSD" amino acids 4 to 163 (160 residues), 26.6 bits, see alignment E=6.1e-10 PF16363: GDP_Man_Dehyd" amino acids 4 to 324 (321 residues), 100.7 bits, see alignment E=2.4e-32 PF13460: NAD_binding_10" amino acids 7 to 175 (169 residues), 29 bits, see alignment E=1.9e-10

Best Hits

KEGG orthology group: None (inferred from 95% identity to reu:Reut_B3974)

Predicted SEED Role

"UDP-glucuronic acid oxidase (UDP-4-keto-hexauronic acid decarboxylating) (EC 1.1.1.305)" (EC 1.1.1.305)

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.1.1.305

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YDH9 at UniProt or InterPro

Protein Sequence (324 amino acids)

>RR42_RS30920 UDP-4-amino-4-deoxy-L-arabinose formyltransferase (Cupriavidus basilensis FW507-4G11)
KKVLILGVNGFIGHHLTRRILETTSWEVYGMDMSSDRLGDLIDHPRMHFFEGDITINKEW
IEYNIRKCDVVLPLVAIATPATYVRQPLRVFELDFEANLPIVRAAVKYGKHLVFPSTSEV
YGMCHDDEFDPETSELICGPINKPRWIYACSKQLMDRVIHAYGMEQGLNYTLFRPFNWIG
AGLDSIFESKEGSSRVVTQFLGHIVRGEPIKLVDGGAQKRAFADVTDGISALMRIIENPN
GIATGKIYNIGNPRNIHSVRELAEMMLKMAGDYAEYAEEAKKTQIVETSSGDFYGKGYQD
VQNRVPKIDNTVEELGWKPEVSME