Protein Info for RR42_RS30905 in Cupriavidus basilensis FW507-4G11

Annotation: aminotransferase DegT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 387 PF01041: DegT_DnrJ_EryC1" amino acids 16 to 378 (363 residues), 376 bits, see alignment E=3.4e-116 PF00155: Aminotran_1_2" amino acids 38 to 127 (90 residues), 22.4 bits, see alignment E=9.6e-09 PF00266: Aminotran_5" amino acids 68 to 250 (183 residues), 22 bits, see alignment E=1.2e-08

Best Hits

KEGG orthology group: None (inferred from 88% identity to rme:Rmet_4589)

Predicted SEED Role

"UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC 2.6.1.-)" in subsystem Lipid A-Ara4N pathway ( Polymyxin resistance ) (EC 2.6.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.6.1.-

Use Curated BLAST to search for 2.6.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YNQ6 at UniProt or InterPro

Protein Sequence (387 amino acids)

>RR42_RS30905 aminotransferase DegT (Cupriavidus basilensis FW507-4G11)
MTASAAQAFLPFVKPNIDAAAIAEVGKVLASGWITSGPKMHAFEAALSELFGGRPVRTFA
NGSATMEIALRVANIGPGDEVITTPITWVATANVVITVGAKPVFVDIDPRTRNIDLDAVE
AAITPRTRAIMPVYLSGLPVDMDRLYAIAKKHNLRVIEDAAQAIDSRWRGQRIGAFGDLV
SFSFQANKNITSVEGGCLVMNSPEEAERAERLRLQGVIRTGMDGMDVEEPGGKFNLTDVN
AAIGLSQLAQLDAITARRAELAEAYYRCAADSGLADLGIELPLPRDGELATTNWHMFQVV
LPAERIEGGRTAVMEAMREQGVGTGVHYPAVHLFSYYRSLGWREGMLPHAERIGRSIVTL
PMFPAMQAADVERVCATLSETCKRLFK