Protein Info for RR42_RS30820 in Cupriavidus basilensis FW507-4G11

Annotation: uracil phosphoribosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 PF07958: DUF1688" amino acids 40 to 440 (401 residues), 469.7 bits, see alignment E=4.2e-145

Best Hits

KEGG orthology group: None (inferred from 86% identity to reu:Reut_B3986)

Predicted SEED Role

"Possible pyrimidine-degrading protein DUF1688"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YM82 at UniProt or InterPro

Protein Sequence (440 amino acids)

>RR42_RS30820 uracil phosphoribosyltransferase (Cupriavidus basilensis FW507-4G11)
MNEIPEAGGVRGAANPFINGEDDAGGWASPVPPGHPAAALLTGHAVRTRCAAVTDHVAAG
ASELFTWHPERIPAVADYVAATIRQRYPDLNVPYHSRWRHFESGGPGEKLDRWQILCERG
GLSGEADREERARIGIDLVIPSVLLDAGAGPDWRYRDPASDLSLTRSEGLGVASFDLFAR
GGFSAQPGQPLRSDAERLMRIDASSIATAFQVAQHNPLVGLDGRARLLRRLGEVAQATPA
VFGSPARLGNLFDYLKAHASSGQIEAGFVLTTLLVALGPVWPGRVSLDGVSLGDCWHHPA
CTDGLVPFHKLTQWLTYSLLEPLEDAGLTVTGLEVLTGLPEYRNGGLLFDFELMVPRDPG
FTAVAHTVDEPVIVEWRALTVTGLDLVAASVREALGLSAESFPLARVLEGGTWAAGRRIA
AKRRPGGPPPFAINSDGTVF