Protein Info for RR42_RS30180 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 473 transmembrane" amino acids 36 to 58 (23 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 103 to 122 (20 residues), see Phobius details amino acids 128 to 149 (22 residues), see Phobius details amino acids 170 to 192 (23 residues), see Phobius details amino acids 204 to 224 (21 residues), see Phobius details amino acids 246 to 269 (24 residues), see Phobius details amino acids 288 to 308 (21 residues), see Phobius details amino acids 316 to 336 (21 residues), see Phobius details amino acids 342 to 364 (23 residues), see Phobius details amino acids 384 to 407 (24 residues), see Phobius details amino acids 427 to 449 (23 residues), see Phobius details TIGR00792: sugar (Glycoside-Pentoside-Hexuronide) transporter" amino acids 33 to 465 (433 residues), 328.9 bits, see alignment E=2.1e-102 PF13347: MFS_2" amino acids 35 to 450 (416 residues), 287.8 bits, see alignment E=1.2e-89 PF07690: MFS_1" amino acids 46 to 395 (350 residues), 54.8 bits, see alignment E=7.6e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YLV2 at UniProt or InterPro

Protein Sequence (473 amino acids)

>RR42_RS30180 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MTAANLDCAVSPTALPAPAPAPGNDERLALRKKLGFGLGDFAFNLYWQATTLYLLYYYTD
VLGLPPVTAGWIFGGALLWDALCDPVAGYIANRTRTRWGRYRPYLLFGSVPLALSFMAMF
FPTNLQGTTLLALVLVTHMIFRTTYTVLSMPYNALMATLTCDSRERGSLAAYRMVCASAA
GLVVALLTLKLVHVFGMADQKRGFFVVMALYAVASIPVFLLTFFSTQERVQPDSHGITIR
EALATVAHNLPFLLACGITVAIVGAGTFFSKTLPYVMKYGLHREDLIGPALGTVAVQVFI
AIPFWAWVMRRTSKRFVAMAGGCLGICGYAALGAIGMPSISVFFILIGLIGFSIAAALLS
MWAMVPDTVEYGEWRTGIRGEGTIFGVFSFAHKVALAMAVGGVGHMLGAVDFVANRSQAQ
STIDGIWAMLWQGPMIFLGISVGLAFLYPLSPGKHRKILEALHQRRAARTPSN