Protein Info for RR42_RS29395 in Cupriavidus basilensis FW507-4G11

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 transmembrane" amino acids 19 to 41 (23 residues), see Phobius details PF12833: HTH_18" amino acids 171 to 245 (75 residues), 52.8 bits, see alignment E=2.1e-18

Best Hits

Predicted SEED Role

"Similarities with probable transcriptional regulator LumQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YCP1 at UniProt or InterPro

Protein Sequence (255 amino acids)

>RR42_RS29395 AraC family transcriptional regulator (Cupriavidus basilensis FW507-4G11)
MPCGRSSGSFMWIDPDRVLYVGLLGAPSVRSIGAILLYVALDAPFRLSVADGEWETAEIA
FVPPYAAHRIASDSRSLCGFLIEPETVDMSRLPLPLRGPGGALAAPRMAQHARDLIAQLR
GMRRPELGAGLLDALLLGEPLAPRSLDPRIDAAVRQIKADPGGRSAASDHARDANLSFSR
FLHLFKEEVGTPFRTFRTWKRARSLLHYVTQQANLAEVALDTGYPDSTHFSHSIRRVYGL
KPRDIFAGSRKLALH