Protein Info for RR42_RS28840 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 130 PF01042: Ribonuc_L-PSP" amino acids 19 to 125 (107 residues), 96.9 bits, see alignment E=4.2e-32

Best Hits

Swiss-Prot: 42% identical to RIDA_PYRFU: 2-iminobutanoate/2-iminopropanoate deaminase (yjgF) from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)

KEGG orthology group: None (inferred from 92% identity to rme:Rmet_4773)

Predicted SEED Role

"Bona fide RidA/YjgF/TdcF/RutC subgroup"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YMJ2 at UniProt or InterPro

Protein Sequence (130 amino acids)

>RR42_RS28840 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MDIKRFGVEGGAGTGGQHMPFSRAVQADGWLYVSGQVPMVAGEVIDGGIVAQTHQAIKNV
LAILAEAGYGTEHIVRCGVWLDDARDFASFNKIFKEYFGANPPARACVQSSMVVDCKVEV
DCIAYKKPAA