Protein Info for RR42_RS28800 in Cupriavidus basilensis FW507-4G11
Annotation: isocitrate dehydrogenase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 64% identical to IDH_AZOVI: Isocitrate dehydrogenase [NADP] (icd) from Azotobacter vinelandii
KEGG orthology group: K00031, isocitrate dehydrogenase [EC: 1.1.1.42] (inferred from 92% identity to cti:RALTA_B1630)MetaCyc: 64% identical to isocitrate dehydrogenase (NADP-dependent) (Azotobacter vinelandii)
Isocitrate dehydrogenase (NADP(+)). [EC: 1.1.1.42]
Predicted SEED Role
"Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)" (EC 1.1.1.42)
MetaCyc Pathways
- superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass (23/26 steps found)
- superpathway of glyoxylate bypass and TCA (11/12 steps found)
- TCA cycle I (prokaryotic) (9/10 steps found)
- TCA cycle V (2-oxoglutarate synthase) (8/9 steps found)
- nitrogen remobilization from senescing leaves (7/8 steps found)
- partial TCA cycle (obligate autotrophs) (7/8 steps found)
- superpathway of NAD/NADP - NADH/NADPH interconversion (yeast) (7/8 steps found)
- TCA cycle IV (2-oxoglutarate decarboxylase) (7/9 steps found)
- mixed acid fermentation (12/16 steps found)
- cytosolic NADPH production (yeast) (4/5 steps found)
- methylaspartate cycle (14/19 steps found)
- TCA cycle VI (Helicobacter) (6/9 steps found)
- TCA cycle VII (acetate-producers) (6/9 steps found)
- reductive TCA cycle I (7/11 steps found)
- ethene biosynthesis V (engineered) (17/25 steps found)
KEGG Metabolic Maps
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of alkaloids derived from terpenoid and polyketide
- Biosynthesis of phenylpropanoids
- Biosynthesis of plant hormones
- Biosynthesis of terpenoids and steroids
- Citrate cycle (TCA cycle)
- Glutathione metabolism
- Reductive carboxylate cycle (CO2 fixation)
Isozymes
Compare fitness of predicted isozymes for: 1.1.1.42
Use Curated BLAST to search for 1.1.1.42
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A0C4YRL1 at UniProt or InterPro
Protein Sequence (745 amino acids)
>RR42_RS28800 isocitrate dehydrogenase (Cupriavidus basilensis FW507-4G11) MSTQQPTIIYTLTDEAPLLATSAFLPIIRTFTAPAGINVTTSDISVAGRILGEFPEFLTE AQRVPDNLAELGRLTLQPDTNIIKLPNISASVHQLVSAIKELQAKGYKVPDFPEDPKTDA EKAIRQRYSKCLGSAVNPVLREGNSDRRAPAAVKNYARKNPHSMGEWSMASRTHVAHMKH GDFYHGEKSMTLDRARDVKMELVTKSGKTIVLKPKVSLLDGEIIDSMFMSKKALCDFYEE QMEDARKTGVMLSLHVKATMMKVSHPIVFGHAVKIFYKEAFEKHGKLFDELGVNVNNGLV NLYDKLESLPSSKREEIIRDMHACHEHRPELAMVDSAKGISNLHAPNDVIVDASMPAMIR IGGKMWGADGRPKDTKAVIPESTFARIYQEIINFCKTNGNFDPVTMGTVPNVGLMAQQAE EYGSHDKTFEVPEAGEARIVDIATGEVLLVQNVEEGDIWRMCQVKDAPIRDWVKLAVTRA RNSGMPAIFWLDPYRPHEAEMIKKVETYLKDHDTTGLDIQIMSQVRAMRYTLERVIRGLD TISVTGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVKQLVEEN HLRWDSLGEFLALAVSLEELGIKTSNEKAKVLAKTLDAATGKLLDNNKNPSPKTGQLDNR GSQFYLAMYWAQELAAQTDDAALAAQFAPLAKQLTDNEQVIVGELSAVQGKQADIGGYYK PDFAKLDIVMRPSKTLNAALAAVKA