Protein Info for RR42_RS28620 in Cupriavidus basilensis FW507-4G11
Annotation: ABC transporter
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 43% identical to Y412_METJA: Uncharacterized ABC transporter ATP-binding protein MJ0412 (MJ0412) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 75% identity to pfs:PFLU3717)Predicted SEED Role
"Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A0C4YJL8 at UniProt or InterPro
Protein Sequence (276 amino acids)
>RR42_RS28620 ABC transporter (Cupriavidus basilensis FW507-4G11) MVSAVLDKPAQAQPAQAATGRDSASNGVRLTIDQVSHHFTLRDQVLPVLSRVSLTAEPGE FVALLGPSGCGKSTLLRLVAGLEPPRRGTLAVDGVPIGGPDPSRVVVFQDPTLYPWRTVW DNAALGLEARGLLGSQRERVDDALARVGLTEFARAYPRQLSGGMAQRAALARALVNEPRL LILDEPLGKLDSLTRLSMQGELVSLWQRARFTALLVTHDVEEALLLATRVIVFSERPARI TAEIKIDRDYPRHRDDPELIRLRREILGLLGLGQGW