Protein Info for RR42_RS27965 in Cupriavidus basilensis FW507-4G11

Annotation: ferredoxin:oxidoreductase FAD/NAD(P)-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1141 transmembrane" amino acids 918 to 940 (23 residues), see Phobius details PF04879: Molybdop_Fe4S4" amino acids 9 to 55 (47 residues), 23.3 bits, see alignment (E = 1.5e-08) PF00384: Molybdopterin" amino acids 59 to 554 (496 residues), 126.3 bits, see alignment E=4.6e-40 PF01568: Molydop_binding" amino acids 655 to 773 (119 residues), 68.5 bits, see alignment E=1.5e-22 PF00175: NAD_binding_1" amino acids 920 to 1027 (108 residues), 47.6 bits, see alignment E=7.4e-16 PF00111: Fer2" amino acids 1077 to 1133 (57 residues), 38.6 bits, see alignment 2.5e-13

Best Hits

KEGG orthology group: None (inferred from 68% identity to reu:Reut_B5761)

Predicted SEED Role

"Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.5.3)" (EC 1.8.5.3)

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.8.5.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YJ78 at UniProt or InterPro

Protein Sequence (1141 amino acids)

>RR42_RS27965 ferredoxin:oxidoreductase FAD/NAD(P)-binding protein (Cupriavidus basilensis FW507-4G11)
MIQEDKRGYCTLCRSRCGTVNVVENDALIAVRPDTSHPTGKAMCMKGKSAPELVHGADRV
LYPMRRTTPKTDADPGWQRISWEHALAEVAQRLLQARCEGGAESVAFAVTTPSGTPLSDS
IDWIERLIRLFGSPNTCYATEICNWHKDYAHAFTFGCGMPTADYRNAELIVLWGHNPTNT
WLSQAEAIGAGRAAGAKLLVVDPRQTALAGQAEQWLRVRPGTDAVLAMAIANLLIEANAF
DLAFVRQWTNGPLLVRSDNGRFLRGRDLGLADGDAYLAWDAHAGQARPSSTLTGRDFEHV
ALRGTFEVGHATGTATLACRPAFDLYAGECARYPADVAERLTWVAQADIRHAASLFGSAR
RVAYHAWSGVGQHDNATQTDRAIACLYALTGSFDKPGGNRIFQKPPYNPVNSFDLLPPAQ
KSKALGYDARPLGPPAQGWVTARDLYRAILHAQPYAVRTLMAFGTNPLLSQADVDDGERA
LRSLDFYVHCDLFETPSSRYADILLPVNTPWEREGLRIGFEISAEAEQLVQLRQRMVSPR
GESRSDNDIVFDLAVRLGMGQAFFGGSLEAGWNHMLAPSGLTVDKLREQPEGIRVPVADV
ERKYAGRPRARAFNTQTGLVELYSEQLLRHGYPPLPRAGQCPEEADDAAGDAYPFVLTSA
KSGYYCHSQHRGLPSLRRRALQPEAEIPAALAAARGIASGDAIRVTTSMGSTRFIAKIRE
GLHPRVVVGEFGWWQGCDALAQTALGVTGENNSNYNGLIAADSIDPVSGSVPLRAYRCNV
EHDPAFDVTRRRWDGYRAFRVASLVKEAREVTSVCLEPIDGGGLPDFLPGQHVTIKLTVP
PAGEEIVRSYSLTGPAVLPMRRGYSISVRRAAGLTDTGEAVFGRASSHINLCLAIGDIVS
LRSPSGTFVMPVRTRRPLVLLAGGIGITPFVSLLESLAGLADAPKILLLYANQNGLAHAF
RSRILALRHTLPTLEVVNFYDSPAQGDVPGVDYDVAGRVSAEHVPAGLLGQRPLVYMCGP
APMMTAFANALAERGVPRADILREVFRSPERVAAGPGQQFNVVFARSGTTGTWRSADGPL
LGFAEKLGLALPSGCRVGQCESCAVSVVSGRIRHLHGEEPDDAGMCLACQAVPASDIVLN
A