Protein Info for RR42_RS26810 in Cupriavidus basilensis FW507-4G11

Annotation: endoribonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 157 PF14588: YjgF_endoribonc" amino acids 7 to 146 (140 residues), 97.7 bits, see alignment E=7.2e-32 PF01042: Ribonuc_L-PSP" amino acids 19 to 151 (133 residues), 56.9 bits, see alignment E=2.1e-19

Best Hits

Swiss-Prot: 53% identical to TCP17_TRYCR: Protein TCP17 (TCP17) from Trypanosoma cruzi

KEGG orthology group: None (inferred from 87% identity to axy:AXYL_00160)

Predicted SEED Role

"Putative translation initiation inhibitor, yjgF family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YQF6 at UniProt or InterPro

Protein Sequence (157 amino acids)

>RR42_RS26810 endoribonuclease (Cupriavidus basilensis FW507-4G11)
MTLSLSARVAELGLTLEAAAAPAANYVSFVQDGNQLYISGQISREHGQAAYLGRLGDNIS
DEDGVRAARLSALGILSQIAAATGDRLDRVARVVRLGVFVACTPDFNRQSAIANGASDLM
VQVFGDAGRHARSAVGVASLPAGVAVEVEAVISLTPA