Protein Info for RR42_RS25935 in Cupriavidus basilensis FW507-4G11

Annotation: mechanosensitive ion channel protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 831 signal peptide" amino acids 1 to 50 (50 residues), see Phobius details transmembrane" amino acids 244 to 263 (20 residues), see Phobius details amino acids 284 to 309 (26 residues), see Phobius details amino acids 325 to 343 (19 residues), see Phobius details amino acids 361 to 380 (20 residues), see Phobius details amino acids 395 to 415 (21 residues), see Phobius details amino acids 436 to 459 (24 residues), see Phobius details amino acids 465 to 483 (19 residues), see Phobius details amino acids 522 to 545 (24 residues), see Phobius details amino acids 574 to 591 (18 residues), see Phobius details amino acids 611 to 634 (24 residues), see Phobius details amino acids 640 to 659 (20 residues), see Phobius details PF12607: DUF3772" amino acids 166 to 227 (62 residues), 67.1 bits, see alignment 1.4e-22 PF00924: MS_channel_2nd" amino acids 658 to 723 (66 residues), 73.2 bits, see alignment E=2.3e-24 PF21082: MS_channel_3rd" amino acids 739 to 814 (76 residues), 26.7 bits, see alignment E=9.6e-10

Best Hits

KEGG orthology group: None (inferred from 76% identity to reh:H16_B1855)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YJ55 at UniProt or InterPro

Protein Sequence (831 amino acids)

>RR42_RS25935 mechanosensitive ion channel protein (Cupriavidus basilensis FW507-4G11)
MAIHANLRDCRPGKPISKDISLSMSKLPRLVLSLVLVALLHLIPTALPAATADTTLNADA
PATRPPSRADAVAELKRLQTEQDRIKQLASSPTSGTQLEGLDDAIHQLASDVDKLSAALT
PQRAQLQAQLDVLGPPPAAGTTPEAAAVAQQRADLNARKAQLDSGLKQAAEVKGNVTNLS
EQIAKLQRSRLKNQLALRSASILGTAFWEPLFAPSQEDQQRLSAFMGQVTPLWGMAWQPG
RQTVTALLLLLAIGVWTIGRRLIERALAWFCLTRLPESRLRRSALALATVLATVAATAIA
VQVVCFAFVPPGELPAQVQDLISELGKLTLTSALIAGLGRALLCTHHPSWRVPALADKVA
LAMRPFPSVLAGLLLIAGTLEQLNRTADTSLQVTLLGRGLVSLVVVLTIGAALLRANRVR
TKLAAAGERPEARSTFAGLIHAGVTVTVVASLMALLIGYITFARFLTYELVWIDIVLCSL
YLLTQLTRDVCESVFSAHHPSGKVIKQLFGLGDSHLAQASTVLSGIGTSLLLLVAVIALL
TGGFGTTPSDLLNSLLTMLGGERLRSLNIMPERILNAVIALSVGTCLLRSVRRWLDAELL
PKVCMEAGLRASLITLFSNIGYVLIVLLTLSLLGVRWENLAWIVSALSVGIGFGLQEIVK
NFVSGLILLTERPVKVGDMVSIGGVEGDIKRINVRATEILLGDRSTVIVPNSQLISQNLR
NVTMSNSTQGVATLLLTFPLNIDPEQVRELLLDSYRENEAILDKPAPSVTFSQLAPNGIT
LSVTGYVGSPRIATATKSDLLFEILKRLRAADISLSVPQTLRVENMAALGA