Protein Info for RR42_RS25825 in Cupriavidus basilensis FW507-4G11

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 316 transmembrane" amino acids 238 to 256 (19 residues), see Phobius details amino acids 288 to 306 (19 residues), see Phobius details PF09995: MPAB_Lcp_cat" amino acids 68 to 298 (231 residues), 232.4 bits, see alignment E=3.9e-73

Best Hits

KEGG orthology group: None (inferred from 77% identity to rme:Rmet_5234)

Predicted SEED Role

"FIG00973952: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YJ13 at UniProt or InterPro

Protein Sequence (316 amino acids)

>RR42_RS25825 histidine kinase (Cupriavidus basilensis FW507-4G11)
MSGSQGQQPGTPPSTPQAAPLPRRLLDRLRARAGAQVRGLTRSNSGLSLDYDNPPGDPGL
FGPDAVCWRVHADFPAMLAGGVSALLMQTMHPLALAGVWDHSTFRTDMQGRLGRTAQFIA
GTTYGNRADALALIDRVRRIHAAIKGTAPDGRPYAADDPALLTWVHVAEVSSFLTAYLRY
VGPLSVTEQDRYYAEVAQIAERLGATGVPRSADAIAGYLERMRPQLVVSERTREVVRLVM
AMPVASPLLVPAVRVMGDAGIALLPRWAQRELGLHGSTAIRRPVSLAGMRVLAPTLRWAL
GSGLAARARRRAMQPS