Protein Info for RR42_RS25815 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 265 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 36 to 54 (19 residues), see Phobius details amino acids 74 to 94 (21 residues), see Phobius details PF02698: DUF218" amino acids 110 to 255 (146 residues), 104.4 bits, see alignment E=2.2e-34

Best Hits

KEGG orthology group: None (inferred from 66% identity to reh:H16_A0026)

Predicted SEED Role

"Integral membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YI17 at UniProt or InterPro

Protein Sequence (265 amino acids)

>RR42_RS25815 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MHDLKTGAFWRRACLALLGALLVADAIALMLMGLFNFGVVLPLAIGAAFLALSWRWEQVV
RWRAASPRRRWIWALGRTAFAAWLVTLGMFFYFISASNANFPATGPAANTILILGSGTPR
CAASPTLAARLDKGLALARQWPAARVVVSGGQDFGLQCSEADIMADYLIAHGLAPERLIR
EDRSTSTEENLLFSHRLLAQQGVSAADPLVLVTSDFHLVRAKRIARKAGFQAVSGAGAPT
PLYLRYNAWLREYFAFISGWVLREF