Protein Info for RR42_RS25805 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 464 transmembrane" amino acids 32 to 56 (25 residues), see Phobius details amino acids 67 to 87 (21 residues), see Phobius details amino acids 96 to 116 (21 residues), see Phobius details amino acids 122 to 142 (21 residues), see Phobius details amino acids 154 to 176 (23 residues), see Phobius details amino acids 182 to 203 (22 residues), see Phobius details amino acids 271 to 291 (21 residues), see Phobius details amino acids 309 to 328 (20 residues), see Phobius details amino acids 335 to 354 (20 residues), see Phobius details amino acids 360 to 383 (24 residues), see Phobius details amino acids 396 to 420 (25 residues), see Phobius details amino acids 426 to 445 (20 residues), see Phobius details PF07690: MFS_1" amino acids 36 to 372 (337 residues), 138.4 bits, see alignment E=3e-44 amino acids 311 to 448 (138 residues), 38.1 bits, see alignment E=8.9e-14 PF00083: Sugar_tr" amino acids 65 to 458 (394 residues), 155.2 bits, see alignment E=2.8e-49

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YAT0 at UniProt or InterPro

Protein Sequence (464 amino acids)

>RR42_RS25805 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MRPGDANADNEGRIVAQVEAMPLTPLHRLARVIVGSATFFDGFDVLAIAAAMPVLIKVWS
LSLEQVGYIISIGYLGQLLGSLGFSYLADKIGRLRCASLSVAIFALGSLACGFAGGPVSF
MVYRFIQGLGLGGELPVAATYINELAKAGHRGRFVLFYELIFPIGLFTASLAGMWAVPNL
GWQAMFFIGALPALIALCMRRFLPESPRWLASKGRFQEADAALDRFRKSCRTVDVPSLPG
IPAQPNASAVRRGTGVSWQSLFRPPLLRRTLVLFTLWFAGGFVTAGVTAWMPTIYRQEFH
VDLATALKFGTYTSLAGIIGSAACAIAIDRFGRRLWMTMTWLCTGVAMLAPIVFAPMTAA
STALCISTAFGFSAAAFIGCYVYTPELYPTQIRTMGVGVSSAMLRFASIVCPSMIGWFVA
RGTLNTSFGAIAGVAFAAALAVGLFGEETSGRTLEEASSVPQTP