Protein Info for RR42_RS25665 in Cupriavidus basilensis FW507-4G11

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 418 transmembrane" amino acids 16 to 34 (19 residues), see Phobius details amino acids 41 to 60 (20 residues), see Phobius details amino acids 66 to 86 (21 residues), see Phobius details amino acids 94 to 113 (20 residues), see Phobius details amino acids 118 to 140 (23 residues), see Phobius details amino acids 161 to 182 (22 residues), see Phobius details amino acids 189 to 213 (25 residues), see Phobius details amino acids 239 to 262 (24 residues), see Phobius details amino acids 270 to 292 (23 residues), see Phobius details amino acids 312 to 333 (22 residues), see Phobius details amino acids 379 to 403 (25 residues), see Phobius details PF07690: MFS_1" amino acids 33 to 331 (299 residues), 63.5 bits, see alignment E=8.4e-22 amino acids 244 to 402 (159 residues), 33.5 bits, see alignment E=1.1e-12

Best Hits

KEGG orthology group: None (inferred from 87% identity to reh:H16_B0899)

Predicted SEED Role

"PUTATIVE TRANSPORT TRANSMEMBRANE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YPU4 at UniProt or InterPro

Protein Sequence (418 amino acids)

>RR42_RS25665 ABC transporter permease (Cupriavidus basilensis FW507-4G11)
MHTLKDPVAPNSRGWLARQVLPTGVHAGALPLLVGRALRGFCDGFIAVLLPAYLLALGFA
QLAVGLISSATLIGSALATILVGILGHRYPQRRLLVLAAALMVATGIGFAGLSSLWPLLP
VAFVGTLNPSSGDVSVFLPLEQARLADSSSSDARTALFARYSLTGAFSAAVGALAAALPG
WLAPQLGISFLSAMRVMFMIYALTGVALWFLYARIPEPHPHATSVRVPLGPSRRIVTRLA
LLFSVDAFAGGLVVNSLLALWLMQRFGLSLGAAGQFFFSAGMLAAGSQLVAVPLSRKFGL
LNTMVFTHIPSSLCLIAAAFSPSLVAALALLLVRSALSQMDVPTRTAYVMAVVTPPERPA
AASLTAVPRSLASALGPTLAGALFAMGWVGAPLVACGLLKIAYDLALLGTFRRIRPVD