Protein Info for RR42_RS25630 in Cupriavidus basilensis FW507-4G11

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 transmembrane" amino acids 38 to 57 (20 residues), see Phobius details amino acids 66 to 87 (22 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 125 to 152 (28 residues), see Phobius details amino acids 168 to 190 (23 residues), see Phobius details amino acids 200 to 221 (22 residues), see Phobius details amino acids 264 to 282 (19 residues), see Phobius details amino acids 288 to 307 (20 residues), see Phobius details amino acids 318 to 338 (21 residues), see Phobius details amino acids 344 to 363 (20 residues), see Phobius details amino acids 383 to 407 (25 residues), see Phobius details amino acids 413 to 432 (20 residues), see Phobius details PF00083: Sugar_tr" amino acids 29 to 235 (207 residues), 99.2 bits, see alignment E=2.7e-32 amino acids 250 to 427 (178 residues), 26 bits, see alignment E=4.3e-10 PF07690: MFS_1" amino acids 65 to 397 (333 residues), 102.8 bits, see alignment E=2e-33 amino acids 267 to 435 (169 residues), 47.7 bits, see alignment E=1.1e-16

Best Hits

KEGG orthology group: None (inferred from 85% identity to bur:Bcep18194_B2032)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (437 amino acids)

>RR42_RS25630 transporter (Cupriavidus basilensis FW507-4G11)
MQTPSTLDDGAAVTTPTRTTRHYLLAGWASMAGTTIEWYDFFLYGTAAALVFNRIFFPSL
DPTVGTLAAFGTFAVGFIGRPLGGIVFGHFGDRIGRKSMLMATLLLMGVPSMIIGMIPSY
DSIGYWSTALLVAMRFLQGMAVGGEWGGAVLMAVEHAPKGRKGLFGSLPQTGVGLGLILS
SLAMTSVAAMAEADMLSWGWRIPFLASIALVGLGGFIRLKVPESPDFQKMKTQGKAVKAP
VLAAIRNHPRAMLTIIGARAAENTWFYMVVTFSLAYAANHLHLPKADVLHAITAGAVLSL
VTMPLCGHLSDRIGQRRMFAIGLVLMCLFAAPFFAMLGTREPTAVWWAMVLGLGVVFPIL
YAPQSLLFATQFPAEIRYSGISLSVQLAGILGGGFAPMIATSLLAAGGGDPHYVIYYLVG
LGTFAILCTLLMRSPRA