Protein Info for RR42_RS25415 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 923 transmembrane" amino acids 741 to 758 (18 residues), see Phobius details PF13191: AAA_16" amino acids 22 to 165 (144 residues), 35.7 bits, see alignment E=2.6e-12 PF17874: TPR_MalT" amino acids 459 to 800 (342 residues), 111.4 bits, see alignment E=1.1e-35 PF00196: GerE" amino acids 860 to 913 (54 residues), 49.5 bits, see alignment 5.3e-17

Best Hits

Predicted SEED Role

"Transcriptional activator of maltose regulon, MalT" in subsystem Maltose and Maltodextrin Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YAL4 at UniProt or InterPro

Protein Sequence (923 amino acids)

>RR42_RS25415 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MRQSPLVTTKLKPPFNKAKLIERARLVGILGQTLAHKLVLIHGPAGFGKTTLAAQWYARL
SQEGAVVAWLSVDASDNDLERLLAYVVEAIRTVEPDIGSGLAQVIESNPGNATEFVMGSL
INEFELYDQEFVLFLDDWHLVSEPKIHAALELFLSRVPPNFHLVVASRTRVGLPLARLRV
QNELIEINATDLRFDYEESSMFLSNTKALELSPVDLATLWRSTEGWVAALQLAAISLRRA
GNRESLLHWASGTPRDIGEYLAENVLASLPNDMIDFLLKTSLLGRLSPGLCNAVTGRQDS
AHILDVLERQDLFLLPLDEDRQWFRYHHLFAGFLQRKLERDFPTLIPSLHLAASVWFSLH
GQTMESLSHALAAGEKHRAIELVEKDAMSLVQNSYMGSLLGLVSQLPKDLLVDRPLLQTA
IAWANCLTHHPHAAEEALSHVARIAANATPSEKKLLTHEADVIRACIAIYADEIDDVERM
VQPCLESSSEYPPWVVGVAANILTYRYIHTFQFDKVPPLQTWARDFQDRAQGLFSAVYGR
CFSGIAAYLSGNLHLGKKHFLDAFVLAQNTAGKESHAAHLSGSLLGQMKYEMNELEEAEQ
LLQDSRVLGFEGGVVDFYMATFISSARLMVLKGDRGAASIILKEGQETAKHVGLTRLGVA
VACEQARISLLAGDIHTAEQILDGSHFQQYHGEVPAAGIGGQIWDTLQVARARLLCEQGH
PEQAIAILRLQSERARATGRMYHEIVVSVLMAIALSLSGKESEAEDVLTRAVTEGVSLGF
VRIFLDEGQRVIRLLERLREKARRHQGSSGAHSDVGAAANLLITASRAPARGLPLQLPMK
QPIPKLDAGDDPKPPFDDRLKGREIEILKLIDQGHSNKEIARALSISVDTVKWYLKSIFN
KLCVARRGQAIAEARRLRLLDKA