Protein Info for RR42_RS25070 in Cupriavidus basilensis FW507-4G11

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 432 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 48 to 67 (20 residues), see Phobius details amino acids 82 to 101 (20 residues), see Phobius details amino acids 107 to 131 (25 residues), see Phobius details amino acids 141 to 162 (22 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details amino acids 242 to 263 (22 residues), see Phobius details amino acids 275 to 295 (21 residues), see Phobius details amino acids 307 to 326 (20 residues), see Phobius details amino acids 332 to 353 (22 residues), see Phobius details amino acids 364 to 384 (21 residues), see Phobius details amino acids 394 to 416 (23 residues), see Phobius details PF07690: MFS_1" amino acids 20 to 382 (363 residues), 149.8 bits, see alignment E=5e-48

Best Hits

Swiss-Prot: 43% identical to NICT_PSEPK: Putative metabolite transport protein NicT (nicT) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: None (inferred from 53% identity to mno:Mnod_7538)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YKF6 at UniProt or InterPro

Protein Sequence (432 amino acids)

>RR42_RS25070 membrane protein (Cupriavidus basilensis FW507-4G11)
METLEQRVMPKVFRRLVPLLILCYFVSFLDRVNVGFAALQMNKDLGLSATAFGLGAGLFF
LTYFLFEVPSNLLLVRFGARRWIARIMVTWGLVSAATAFVTGPTGFYIVRLLLGLAEAGF
FPGVAYFLTLWFPSAYRARVMGYLLVAAPMSTVIGAPISGGLLNLEGVMGLHGWQWMFIL
EALPAVILGFIALRHLSGEPSDAPWLSADERSWLSQRMATEDRERRAEHHLSVAQVFFTP
KVWLLSMMAFGFFLSIFGVGFFLPQIVKSFGLSNVQTGFVAAIPYVIASLSIVFWARRSD
ARKERRLHIAVPAFIAGVALIAAALVDDSILKMIAFSVAAFGIFGALPAFWAINTTLLSG
PASAAGIAFIGAVGNLGGFAGPSLLGLSKDLTGSYAGGLMILAAVAFVAAAVALGVGRRS
NPPAIALTPTGE