Protein Info for RR42_RS25030 in Cupriavidus basilensis FW507-4G11

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 34 to 53 (20 residues), see Phobius details amino acids 60 to 80 (21 residues), see Phobius details amino acids 88 to 108 (21 residues), see Phobius details amino acids 128 to 147 (20 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 211 to 241 (31 residues), see Phobius details amino acids 250 to 275 (26 residues), see Phobius details PF02653: BPD_transp_2" amino acids 12 to 259 (248 residues), 113.2 bits, see alignment E=6.1e-37

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 76% identity to adk:Alide2_1526)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YPE4 at UniProt or InterPro

Protein Sequence (282 amino acids)

>RR42_RS25030 ABC transporter permease (Cupriavidus basilensis FW507-4G11)
MIDYLLSYQSVLDHILIYSLLAMSQAIALRAGTFSIGSAAFAAIGAYTTAILVTRLGWWP
PLAMASGVALAGGISLMMAFPLSRLRGVFQAVATLALVQVIVTVAMNWDDVTRGALGITG
IPKAATTGWLILIVAMAMALVHTLSRFSLGRAMDVIRQDETVAVSLGISVAYHQRLAMTL
SGLLAGLAGALSACNAYAVNPEDFGFHMLVQALAMAVLGGQTSLWGPLVGATVLTLLPEL
FRVFEEFRDVAQGALLMLIIIYLPHGIADTLAGLAHDRRVKR