Protein Info for RR42_RS24920 in Cupriavidus basilensis FW507-4G11

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 511 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 50 to 68 (19 residues), see Phobius details amino acids 80 to 98 (19 residues), see Phobius details amino acids 110 to 126 (17 residues), see Phobius details amino acids 140 to 162 (23 residues), see Phobius details amino acids 168 to 188 (21 residues), see Phobius details amino acids 204 to 223 (20 residues), see Phobius details amino acids 230 to 251 (22 residues), see Phobius details amino acids 271 to 292 (22 residues), see Phobius details amino acids 307 to 326 (20 residues), see Phobius details amino acids 337 to 354 (18 residues), see Phobius details amino acids 366 to 391 (26 residues), see Phobius details amino acids 409 to 421 (13 residues), see Phobius details amino acids 487 to 506 (20 residues), see Phobius details PF07690: MFS_1" amino acids 18 to 400 (383 residues), 107 bits, see alignment E=5e-35

Best Hits

KEGG orthology group: None (inferred from 66% identity to bxe:Bxe_A2365)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YIG8 at UniProt or InterPro

Protein Sequence (511 amino acids)

>RR42_RS24920 MFS transporter (Cupriavidus basilensis FW507-4G11)
MQKIDGKQPRMNVFAWAIALATGLDYFDNAMFGFFTRHIAGGINASPDELVWASTAYAMT
SVLGILQQQWWVERIGYRRYVSASLLLFAAGSVATALSESSKELAVARGLQGYFIGPMMS
ACRIQLQVSFNPQQRPAAMQVFLVMILLASALAPLSGGYLIAHFGWRALFAGTALGGAAL
ALFAWLAVPHSGQVHPEARGDAHFWPYILFASGLGALLIVMQQVRFEVFSASPALVFLTV
AGLLALAWFVWHQWHHPRPLVRLHALREKTFQVGLVLYVLFYYLSHSMGYLVSRFLEGGL
GYPVENAGQLVGITSLVSLTLAFAYFRYASLVRHKKWMIVPGFLLAVLFGAWMTRMPPGA
SMSWLVVPMVLRGLLLLFVALPVANVTFRIFAVEEFNHGYRFKNIVKQLTYSFATATMII
LDQHRFALHEARLAEFVNPFNPTYQATRDRMVHAFESMGHTNNEAASLALHEIGRMVTQQ
ASFLSTLDGLYFLTWVAICGGIFAMWQKRID