Protein Info for RR42_RS22315 in Cupriavidus basilensis FW507-4G11

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 146 transmembrane" amino acids 20 to 48 (29 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 87 to 107 (21 residues), see Phobius details amino acids 113 to 135 (23 residues), see Phobius details PF07291: MauE" amino acids 24 to 105 (82 residues), 27.1 bits, see alignment E=9.5e-10 PF07681: DoxX" amino acids 25 to 105 (81 residues), 66.8 bits, see alignment E=4.5e-22 PF13564: DoxX_2" amino acids 29 to 111 (83 residues), 26.5 bits, see alignment E=1.2e-09 PF02077: SURF4" amino acids 69 to 142 (74 residues), 37.1 bits, see alignment E=5.9e-13

Best Hits

KEGG orthology group: None (inferred from 71% identity to pfl:PFL_2372)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y8X8 at UniProt or InterPro

Protein Sequence (146 amino acids)

>RR42_RS22315 LysR family transcriptional regulator (Cupriavidus basilensis FW507-4G11)
MSQAAQLNAQTNAHADTPAAAGVAVLGRVLISAIFLLSGASKLAAPAAMIGYIQSVGLPL
PQVALAIAIAVEVVGGIALVLGYRTRLVAAILAVFSVATALAFHANLADQNQFIHFFKNI
AMAGGLLQIVVYGAGRFSLDARRGNA