Protein Info for RR42_RS21615 in Cupriavidus basilensis FW507-4G11

Annotation: alcohol dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 transmembrane" amino acids 566 to 584 (19 residues), see Phobius details PF00034: Cytochrom_C" amino acids 604 to 703 (100 residues), 24.5 bits, see alignment E=8.7e-09 amino acids 761 to 853 (93 residues), 22.5 bits, see alignment E=3.7e-08 amino acids 887 to 967 (81 residues), 28 bits, see alignment E=6.8e-10 PF13442: Cytochrome_CBB3" amino acids 887 to 965 (79 residues), 36.7 bits, see alignment E=6.5e-13

Best Hits

Predicted SEED Role

"Putative diheme cytochrome c-553" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YIT9 at UniProt or InterPro

Protein Sequence (1000 amino acids)

>RR42_RS21615 alcohol dehydrogenase (Cupriavidus basilensis FW507-4G11)
MAPASPGAWQPPPEREWLAGHVIRPPVLAWQTGTLLSARLIGCDETAARALPGVATVLRR
GDFLGIAADTAPQALQAAHALRARWQAPPKAAASGLPLARRIVAEHGDAAQAMADAAGRS
AQDYPWPLAGLQAAGCSAMAEWRDGALRVWLPSRRPGALRAELAALLGIGEDRITLICWQ
APGHDEDPLYAHHAAADAALLAHSAGRVVRVRVEAHELGATQAVVNTHIESAWTRDGEIA
AYAVNTAVDARGSAAVMHAPPLALWLTRTTAPVTEIEPQASAGGDTRDDAILPPYRFDSL
SVTQADLPGQPRVESTPAQAARAHVFAHESHLDEVAAASAQDPVALRLRHLDDTRGAGLV
RRVAAQANWQPRGERPQAQQNVRRGRGFAYASTIEAGLADGGQPVHSWSAWVAEVEVDAT
TGEVSVTGVTLGHDSDAGEQGGVDAVALQQEAARAAQQLTVDGSRSDSWPAANLPAVHDA
SLPALATAQLPEVRVGGALRPASATLGTSAAVTLPAAPAVANAIFDATGVRLREPPFSGE
RIRLALAAQANPESTPKRGAARKRNWLLAGATAAAGLFVTAMPWRAPIAPVAPPGAGFYS
AATIERGRLVAAAGDCAVCHTAPNGARNAGGLALDTPFGTIYSTNITPDVETGIGNWSYA
AFERAMRQGIHRDGRHLYPAFPYTAFAKTSDGDLQALYAYLMAAEPVRAKAPETALAFPY
NLRPLMAGWNLLFHSPKPFEADPARSAQWNRGAYLAEGLGHCSACHSPRNALGAEQGGRR
YLGGGEAEGWEAPALGKLSHAPVPWTEQALFSYLRTGYAPHHGAAAGPMAPVIEELALLP
EEDVRAIAHYVASFGDAQPDAALASAQARQLEQRSADAARTLGGPAARLYQNACAVCHQS
DQGIRQFGIKPSLALNTNLHGDKPDNLIRVLLDGIPTPGTSDLGYMPAFGESLDDRQLTQ
LVHYLRKRFAPDKPAWDNVDDTLARLRAAPAHRPNHQPNH