Protein Info for RR42_RS21585 in Cupriavidus basilensis FW507-4G11

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 535 transmembrane" amino acids 24 to 46 (23 residues), see Phobius details amino acids 50 to 70 (21 residues), see Phobius details amino acids 87 to 109 (23 residues), see Phobius details amino acids 116 to 138 (23 residues), see Phobius details amino acids 169 to 187 (19 residues), see Phobius details amino acids 192 to 215 (24 residues), see Phobius details amino acids 227 to 246 (20 residues), see Phobius details amino acids 273 to 294 (22 residues), see Phobius details amino acids 299 to 323 (25 residues), see Phobius details amino acids 329 to 349 (21 residues), see Phobius details amino acids 353 to 373 (21 residues), see Phobius details amino acids 399 to 421 (23 residues), see Phobius details amino acids 445 to 463 (19 residues), see Phobius details amino acids 471 to 498 (28 residues), see Phobius details amino acids 510 to 530 (21 residues), see Phobius details PF03169: OPT" amino acids 27 to 192 (166 residues), 32.9 bits, see alignment E=1.5e-12 amino acids 226 to 530 (305 residues), 66.7 bits, see alignment E=9e-23

Best Hits

KEGG orthology group: None (inferred from 92% identity to reh:H16_B0137)

Predicted SEED Role

"FIG00976724: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YGD1 at UniProt or InterPro

Protein Sequence (535 amino acids)

>RR42_RS21585 membrane protein (Cupriavidus basilensis FW507-4G11)
METPAAMNPPLAAKPATRARITEPFLLLVSVGLSVFGAMIGMQLIVSLGISANTSIIGAL
IAIVFSRIPLEITRRFRVLERQNLVQTAISSATFGAANSLMIPLGVPYAMGMPELATPML
IGAVIAMFVDGAMLYFLFGSKIFPATGTWPAGIATAEAIWAGDRGGRKAAFLGLGIAVGV
GGAWLGIPMSAFGAAFLGNLAALTMFGLGLLTRGYSVPLLGIDIAKAYIPHGLMIGAGLV
ALFQVAREIHKSRNAPAADARTIEVPAARASRILSGGFLVYLAIALLISVLAGHVSDMSL
GMLVAFVLYAAFAAYVHELIVGIAAMHSGWFPAFAVALITLTIGILIGFPPTALAVLVGF
SAATGPAFADMGYDLKTGYLLRGEGRDMEAELAGRKQQFFAAMIGFAVAAVVVLVFHGTF
FSQGLLPPVDRVYAASIKAGSSAEIARNLVIWAIPGALLQLLGGSRRQLGILLSTGMLIA
SPLAGWAVLAGLLIRFVLLRLRGERDIAEMSAFAGGVIAGDALFSFFGSVTKLRK