Protein Info for RR42_RS21525 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 46 to 65 (20 residues), see Phobius details amino acids 85 to 109 (25 residues), see Phobius details amino acids 121 to 144 (24 residues), see Phobius details amino acids 149 to 168 (20 residues), see Phobius details PF05230: MASE2" amino acids 19 to 107 (89 residues), 97.6 bits, see alignment E=3.5e-32 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 186 to 362 (177 residues), 138 bits, see alignment E=1.3e-44 PF00990: GGDEF" amino acids 191 to 359 (169 residues), 113.8 bits, see alignment E=6.9e-37

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YFR6 at UniProt or InterPro

Protein Sequence (365 amino acids)

>RR42_RS21525 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MAQSTLNPLAGKGMRFVRRVYAMRAIGLAIGFFAVAAAMLEAGVPRWLLALVFLHGFAWP
HVAAWRSRRSEVPFRAEIQNMMIDAVLGGVWAAAMKFNLLPSVLILAMMSMNNVAAGGTR
LLLHGLGWHLAGALAGIVAFGAAWHPQANLTTIVASLPMLVLYPLALGRTTYSISRRLAA
HGKQIEANSRLDGLTGVLNRGYWEAMLAAEFQACKTGRRSTASLVLLDIDHFKQLNDTHG
HLAGDEALKAFAALVMQHAAQHGTAARGETRQCLVGRYGGEEFGVLLSGASLTQAVEMAE
RLSRSLQPGTAAGAGIAALRGHTASLGVAAFDAGMAGHHEWLAHTDRALYEAKRAGRNRI
RISAG