Protein Info for RR42_RS21310 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 PF12833: HTH_18" amino acids 264 to 343 (80 residues), 76 bits, see alignment E=2.4e-25

Best Hits

Predicted SEED Role

"Ethanolamine operon regulatory protein" in subsystem Ethanolamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y8G8 at UniProt or InterPro

Protein Sequence (353 amino acids)

>RR42_RS21310 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MSATFDRSTDSRAGGHPGRQGIFRVTAAHDADEHASNLSRWNQTYDQLSPGSFTGEVREL
WLPHAQVFIERTNRSLRQSCMAWPDAMWFGVPLPSVQAPATVGGMAIKPTAIAVRPGGTE
FELRTPEDFGIFGIVVETAEFARYMEEVEHRDPASVLGQREVLSVQPWARARLCRALMEI
LSEAAGHHAARAGVTGIAADKVDSALFCGDLQERLLGSLVTLLMASSDSAQRPSVTHINR
QRTVQRIRDYLLAHTADAITVPDLCRHFHLSRRALQYCFEDVAGMSPAAYLRALRLNGVR
RDLKSGAAHSTVSDVAGAWGFHHLSQFAQDYRRMFGELPSAALRGPAGHGGPN