Protein Info for RR42_RS21305 in Cupriavidus basilensis FW507-4G11

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 transmembrane" amino acids 17 to 35 (19 residues), see Phobius details amino acids 40 to 58 (19 residues), see Phobius details amino acids 70 to 92 (23 residues), see Phobius details amino acids 160 to 180 (21 residues), see Phobius details amino acids 201 to 229 (29 residues), see Phobius details amino acids 238 to 256 (19 residues), see Phobius details amino acids 264 to 285 (22 residues), see Phobius details amino acids 310 to 334 (25 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 78% identity to cti:RALTA_B0087)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YM83 at UniProt or InterPro

Protein Sequence (345 amino acids)

>RR42_RS21305 membrane protein (Cupriavidus basilensis FW507-4G11)
MHQPDPPRTPRLPDTKWFNVTTAAYILTALALWMVMQANLVAALMAGLLLYSLVDVLAPK
LVRLHQRHDALAVAILSAVTLLGLTLGGWALVRFVSGDGNTLDTLLIRTADIIDKSRAQL
PVWVSNALPRGVDELANALIAWLREHAQMAQKFGTEVLRSLAHILIGLVIGAMVALYRAI
SKPNRRPLASALVERARNLQLAFSQFIFAQVQISLINTVLTAIYLLVVLPLFGVHLPLAK
TLVALTFLVGLLPVLGNLVSNTGIVVASLSISLPMAIASLFYLVVIHKFEYFLNARIIGA
RINAAAWELLTVMLLMESLYGVAGVIAGPIYYAYLKRELSNRGLI