Protein Info for RR42_RS21270 in Cupriavidus basilensis FW507-4G11

Annotation: phenylacetic acid degradation-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 151 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details PF14539: DUF4442" amino acids 26 to 114 (89 residues), 31.5 bits, see alignment E=3.7e-11 TIGR00369: uncharacterized domain 1" amino acids 28 to 140 (113 residues), 68.8 bits, see alignment E=2.1e-23 PF13622: 4HBT_3" amino acids 54 to 140 (87 residues), 26.6 bits, see alignment E=1.1e-09 PF20789: 4HBT_3C" amino acids 59 to 137 (79 residues), 26.4 bits, see alignment E=1.5e-09 PF03061: 4HBT" amino acids 59 to 133 (75 residues), 52.8 bits, see alignment E=8.1e-18

Best Hits

KEGG orthology group: None (inferred from 62% identity to del:DelCs14_0208)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YIN2 at UniProt or InterPro

Protein Sequence (151 amino acids)

>RR42_RS21270 phenylacetic acid degradation-like protein (Cupriavidus basilensis FW507-4G11)
MTDLSLPAPVNEFAGEAPGLLFALPMPMARVFGLTGVHINAKEARVSMAYHPDHTNSRGD
VHGGALATLLDCALSCAARGHDPRRFGVATIDLSVHFTAPGRGELTANAWCERRGRSLCF
ARGEIRDAQGELLALATGTFKLLDRTPAPAA