Protein Info for RR42_RS20895 in Cupriavidus basilensis FW507-4G11

Annotation: UDP-sugar lipid carrier transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 469 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 50 to 71 (22 residues), see Phobius details amino acids 82 to 104 (23 residues), see Phobius details amino acids 116 to 137 (22 residues), see Phobius details amino acids 285 to 305 (21 residues), see Phobius details TIGR03025: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase" amino acids 22 to 468 (447 residues), 458.1 bits, see alignment E=4.1e-141 TIGR03023: undecaprenyl-phosphate glucose phosphotransferase" amino acids 44 to 469 (426 residues), 512.4 bits, see alignment E=1.5e-157 PF13727: CoA_binding_3" amino acids 66 to 243 (178 residues), 135.2 bits, see alignment E=2.6e-43 PF02397: Bac_transf" amino acids 279 to 460 (182 residues), 222.4 bits, see alignment E=3.2e-70

Best Hits

KEGG orthology group: K03606, putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase (inferred from 73% identity to cti:RALTA_B0012)

Predicted SEED Role

"Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6)" (EC 2.7.8.6)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 2.7.8.6

Use Curated BLAST to search for 2.7.8.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YFE7 at UniProt or InterPro

Protein Sequence (469 amino acids)

>RR42_RS20895 UDP-sugar lipid carrier transferase (Cupriavidus basilensis FW507-4G11)
MSRVRAFVAERQAALQILYRFADAAIVAACGAVVGELLFPHGLRSAAPVHGFITVLCSVS
TLLVFPACGLYNSWRGRSRAALAVRTLAAWGAVCMLGLVTAYLMHQSAALSRLWSMGWVL
SVAVMLLASRVLLYGMLGSVRVHGINAKRVVILGYGSLGHEMYQRVRNNRGAGYDVAGIY
DEGTEQPVPAGVTRLDSLQQVCTFVRNNGVREIWLTLPMAACRDLYDVVSHFRNDLIDIR
WVPDVMSVELLGHRFSDFLGLPVIDLNSPPQSGITGLLKGSFDRAFALAALVGLSPLLLL
IAVLVKCSSPGTVLFRQARLGMDGRPFHVYKFRTMVQHQDAGSVTQAVRGDARVTRIGAF
LRRTSLDELPQFVNVLRGEMSVVGPRPHAIEHNEIYKEVIDRYMLRHRVKPGITGWAQIN
GFRGQTDTVEKMRKRIEFDIFYICNWSFRLDLQIILRTALHGWTGREAF