Protein Info for RR42_RS20510 in Cupriavidus basilensis FW507-4G11
Updated annotation (from data): small component of pyruvate transporter (ybdD-like)
Rationale: Specifically important for pyruvate utilization. 58% identical to E. coli ybdD, which is involved in pyruvate transport (PMID:29358499)
Original annotation: hypothetical protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 58% identical to YBDD_ECOLI: Uncharacterized protein YbdD (ybdD) from Escherichia coli (strain K12)
KEGG orthology group: None (inferred from 92% identity to cti:RALTA_A3163)Predicted SEED Role
"COG2879, Hypothetical small protein yjiX"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A0C4YLP0 at UniProt or InterPro
Protein Sequence (64 amino acids)
>RR42_RS20510 small component of pyruvate transporter (ybdD-like) (Cupriavidus basilensis FW507-4G11) MLEQLGTMGRYLGQSLRLMVGLPDYQTYVAHMEATHPEREPMTYEAFFRERQEARYGGGQ GKCC