Protein Info for RR42_RS20240 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 595 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 35 to 53 (19 residues), see Phobius details amino acids 60 to 78 (19 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 112 to 131 (20 residues), see Phobius details amino acids 159 to 178 (20 residues), see Phobius details amino acids 204 to 226 (23 residues), see Phobius details amino acids 245 to 270 (26 residues), see Phobius details amino acids 282 to 304 (23 residues), see Phobius details PF02653: BPD_transp_2" amino acids 35 to 301 (267 residues), 121.1 bits, see alignment E=7.6e-39 PF00005: ABC_tran" amino acids 359 to 522 (164 residues), 114.8 bits, see alignment E=7.6e-37 PF12399: BCA_ABC_TP_C" amino acids 572 to 593 (22 residues), 37.6 bits, see alignment (E = 1.9e-13)

Best Hits

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein K01998, branched-chain amino acid transport system permease protein (inferred from 92% identity to reh:H16_A3653)

Predicted SEED Role

"Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YHT1 at UniProt or InterPro

Protein Sequence (595 amino acids)

>RR42_RS20240 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MNTNLKNRFFLLAFAVVLALLPVLPTPEFWITLGNYIGLYSIVAIGLVLLTGVGGMTSFG
QAAFVGLGAYSTAYLTTQFGLSPWLGLLVGLVITMASAYVIGLITMRMSGHYLPLATIAW
GLSLFFLFGNLEFLGKYDGLNGIPVLHVLGIELASGRSMFYLIWAVVLVSVIAMQNLLNS
RPGRAIRALKGGGTMAEAMGVNTAWMKVVIFVVAAMLACISGFLYAHLQRAVNPTPFGLN
YGIEYLFMAVVGGVGHVWGAVLGAGILTILKDVLQGVLPKLLGANGNFETIVFGVLMVLL
LQYARDGLWPFIKKLFPSGPPVMAPAQASALPLRAKPQAGELILDVKAARKEFGGLVAVN
DVSFQVRAGEIIGLIGPNGAGKSTTFNLVTGVLPATRGEVLYRGEQISGLPSREIVKRGI
GRTFQHVHLLPTMTVLENVAIGAHLRGDFAPQGGVTAAILRMNKNEEAKLLHEAARQLER
VGLADCMYMEAGSLALGQQRILEIARALCCDPALLLLDEPAAGLRYKEKQALAELLKKLK
GEGMSVLLVEHDMDFVMNLTDRLVVMEFGTRIAEGVPEDVQKDPAVLEAYLGGVE