Protein Info for RR42_RS19095 in Cupriavidus basilensis FW507-4G11

Annotation: GTP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 TIGR03598: ribosome biogenesis GTP-binding protein YsxC" amino acids 7 to 203 (197 residues), 206.4 bits, see alignment E=1.5e-65 PF01926: MMR_HSR1" amino acids 26 to 150 (125 residues), 55.6 bits, see alignment E=2.8e-19

Best Hits

Swiss-Prot: 90% identical to ENGB_CUPNJ: Probable GTP-binding protein EngB (engB) from Cupriavidus necator (strain JMP 134 / LMG 1197)

KEGG orthology group: K03978, GTP-binding protein (inferred from 90% identity to reu:Reut_A3148)

Predicted SEED Role

"GTP-binding protein EngB" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y763 at UniProt or InterPro

Protein Sequence (248 amino acids)

>RR42_RS19095 GTP-binding protein (Cupriavidus basilensis FW507-4G11)
MSLLHQARFFVTVNHLRDLPATAVPEVAFAGRSNAGKSTAINILCNQKRLAFSSRTPGRT
QHINFFGVAPVKAPDPLAFLVDLPGYGYAQVSGSAKFHWQALLSDYVQTRSQLSGLVLMM
DARRPFTDLDCQMVEWFLPTGRPIHVLLTKADKLTNSENALALRETRKVLAGYAEQLDTP
VPLTAQLFSSLKRRGIEEAQRVVAGWLSLPEALPPAAQENKAAVARQAEPEAEPDTAADD
APPDTPAN