Protein Info for RR42_RS17540 in Cupriavidus basilensis FW507-4G11

Annotation: lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF04390: LptE" amino acids 36 to 162 (127 residues), 82.2 bits, see alignment E=2.5e-27

Best Hits

KEGG orthology group: K03643, LPS-assembly lipoprotein (inferred from 85% identity to reu:Reut_A2833)

Predicted SEED Role

"LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B)" in subsystem KDO2-Lipid A biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YJR7 at UniProt or InterPro

Protein Sequence (168 amino acids)

>RR42_RS17540 lipoprotein (Cupriavidus basilensis FW507-4G11)
MDRPLQGRRKVLATLLLAGLLGGCGFHMRGNADFAFKRLYVSIPPNTLMGSDLRRAIRNG
SDTQIVTDPKEADALLDVLQDTRTKTVLSITTTGVVREYRLTQRFTFRLRDAGGQELIAP
SQLVLTRDLTYNEANTLAKDYEEQQLYRDMQRDIVQQLIRRLSAVKAI