Protein Info for RR42_RS17405 in Cupriavidus basilensis FW507-4G11

Annotation: preprotein translocase subunit YajC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 109 transmembrane" amino acids 17 to 38 (22 residues), see Phobius details TIGR00739: preprotein translocase, YajC subunit" amino acids 21 to 101 (81 residues), 94.3 bits, see alignment E=1.8e-31 PF02699: YajC" amino acids 22 to 98 (77 residues), 109.9 bits, see alignment E=2.2e-36

Best Hits

Swiss-Prot: 43% identical to YAJC_ECOL6: Sec translocon accessory complex subunit YajC (yajC) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K03210, preprotein translocase subunit YajC (inferred from 90% identity to rme:Rmet_2945)

MetaCyc: 43% identical to Sec translocon accessory complex subunit YajC (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"Preprotein translocase subunit YajC (TC 3.A.5.1.1)" (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YFZ8 at UniProt or InterPro

Protein Sequence (109 amino acids)

>RR42_RS17405 preprotein translocase subunit YajC (Cupriavidus basilensis FW507-4G11)
MLISNAFAQTAGVTGGAAGGLMSFLPIILMFAVLWFIMIRPQMKRQKESKAMLEALAKND
EVVTAGGILGRVTKVNEQYVTIEIATGTEITVQKSAVTTVLPKGSLKSL