Protein Info for RR42_RS17200 in Cupriavidus basilensis FW507-4G11

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 transmembrane" amino acids 23 to 45 (23 residues), see Phobius details amino acids 52 to 58 (7 residues), see Phobius details amino acids 66 to 86 (21 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details amino acids 151 to 171 (21 residues), see Phobius details amino acids 183 to 204 (22 residues), see Phobius details PF09335: SNARE_assoc" amino acids 45 to 169 (125 residues), 75.2 bits, see alignment E=3.3e-25

Best Hits

Swiss-Prot: 50% identical to DEDA_ECO57: Protein DedA (dedA) from Escherichia coli O157:H7

KEGG orthology group: K03975, membrane-associated protein (inferred from 86% identity to cti:RALTA_A2543)

Predicted SEED Role

"DedA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YJJ1 at UniProt or InterPro

Protein Sequence (213 amino acids)

>RR42_RS17200 membrane protein (Cupriavidus basilensis FW507-4G11)
MQFIDMLLHVDKYLGTVIQNYGAWVYAILFAIVFAETGLVVLPFLPGDSLLFIAGAFCAT
HAMNEWALVGLLLVAATGGNTVNYFVGSWVGPKVFDGHWRFLDQQALRKTHDFYERHGGK
MLVMARFLPIVRTFAPFVAGVSQMTFAKFQLFNVIGAAAWVLGLVFAGYFFGNLPFIKQY
LNLIVLAGIGAAVVPLVLGGLWKLVRGGKRRPS